RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

mgtL.mgtA.IGT

Flanking gene IDs:

  • G0-10689
  • EG12525

Summary:

Name ID Genomic annotation Chromosome Strand
mgtL.mgtA.IGT G0-10689.EG12525.IGT IGT chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 177 0.00 -1.00 4
Stat. Phase (Melamed et al. 2016) 1 19 0.00 -1.00 4
Iron Limitation (Melamed et al. 2016) 1 221 0.00 -1.00 4

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
ykgH.EST3UTR 3UTR Show interaction Show interaction Show interaction