RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

thrL.5UTR

Summary:

Name ID Genomic annotation Chromosome Strand
thrL.5UTR EG11277.5UTR 5UTR chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 308 1.00 0.00 4
Stat. Phase (Melamed et al. 2016) 1 233 0.00 -1.00 0
Iron Limitation (Melamed et al. 2016) 2 1229 0.50 0.00 4

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
gcvB sRNA Show interaction Show interaction Show interaction
yjtD CDS Show interaction