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RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

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Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
rbsD arcZ CDS sRNA chr + 3933308 3933751 chr + 3350611 3350723 10505 74.5
lysR arcZ CDS sRNA chr + 2979185 2979278 chr + 3350665 3350697 40 39.9
insI-2.ydbC.IGR arcZ IGR sRNA chr + 1471321 1471356 chr + 3350674 3350698 73 20.7
yiaV.AS arcZ AS sRNA chr + 3753458 3753502 chr + 3350666 3350697 19 29.1
yegT arcZ CDS sRNA chr + 2180017 2180055 chr + 3350671 3350697 10 96.7
napF arcZ CDS sRNA chr - 2303103 2303554 chr + 3350612 3350700 5265 20.4
aegA arcZ CDS sRNA chr - 2585433 2585549 chr + 3350608 3350698 226 24.6
emrD.tisB.IGR arcZ IGR sRNA chr - 3853710 3853763 chr + 3350677 3350697 11 14.2
mqo arcZ CDS sRNA chr - 2306632 2306652 chr + 3350677 3350697 14 144.4
rlmI arcZ CDS sRNA chr - 1029846 1029929 chr + 3350675 3350697 40 35.8
yhjY.tag.IGR arcZ IGR sRNA chr + 3712922 3712934 chr + 3350678 3350697 19 81.7
yghJ arcZ CDS sRNA chr - 3118888 3119070 chr + 3350668 3350697 34 12.1
bglX.osmF.IGR arcZ IGR sRNA chr - 2219656 2219660 chr + 3350667 3350697 12 371.4
waaL.AS arcZ AS sRNA chr - 3797785 3797854 chr + 3350662 3350698 36 10.4
rcnB arcZ CDS sRNA chr + 2187081 2187098 chr + 3350679 3350698 21 85.6
malG arcZ CDS sRNA chr - 4243407 4243455 chr + 3350670 3350698 152 12.4
yqeC arcZ CDS sRNA chr - 3014663 3014822 chr + 3350662 3350698 261 67.4
yagE arcZ CDS sRNA chr + 282407 282519 chr + 3350665 3350697 64 97.1
ligA arcZ CDS sRNA chr - 2529782 2529810 chr + 3350616 3350697 51 45.6
ibpA arcZ CDS sRNA chr - 3867184 3867227 chr + 3350680 3350697 11 25.4