RILseqDB
A database of Hfq-mediated RNA interactions determined by RIL-seq
RILseqDB
Interactions
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RNA
Interactions
Shared interactors
Data sets
Experiments
Libraries
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Name
Genomic annotation
RNA1
RNA2
RNA1
RNA2
RNA1
RNA2
Chromosome
Strand
Start of first read
Start of last read
Chromosome
Strand
Start of last read
Start of first read
Interactions
Odds Ratio
yejG.5UTR
arcZ
5UTR
sRNA
chr
-
2278217
2278278
chr
+
3350662
3350698
67
11.1
ygiM
arcZ
CDS
sRNA
chr
+
3201335
3201384
chr
+
3350676
3350697
23
10.2
rsgA
arcZ
CDS
sRNA
chr
-
4391496
4391546
chr
+
3350608
3350697
36
5.3
tar
arcZ
CDS
sRNA
chr
-
1972079
1972471
chr
+
3350616
3350700
832
6.2
mlaF
arcZ
CDS
sRNA
chr
-
3339282
3339374
chr
+
3350662
3350698
22
11.5
secD
arcZ
CDS
sRNA
chr
+
427991
428067
chr
+
3350665
3350697
28
14.1
helD
arcZ
CDS
sRNA
chr
+
1024734
1024799
chr
+
3350678
3350697
11
16.4
yijD.AS
arcZ
AS
sRNA
chr
-
4161919
4162075
chr
+
3350678
3350697
13
40.2
oppA
arcZ
CDS
sRNA
chr
+
1302400
1302463
chr
+
3350675
3350697
29
16.9
pgi
arcZ
CDS
sRNA
chr
+
4234781
4234967
chr
+
3350663
3350697
40
49.1
polA
arcZ
CDS
sRNA
chr
+
4047083
4047150
chr
+
3350677
3350697
10
40.7
rfe
arcZ
CDS
sRNA
chr
+
3967996
3968034
chr
+
3350677
3350697
20
10.9
mtgA
arcZ
CDS
sRNA
chr
-
3349548
3349550
chr
+
3350680
3350697
14
15.5
lptB
arcZ
CDS
sRNA
chr
+
3343981
3344048
chr
+
3350666
3350698
47
7.1
blr
arcZ
CDS
sRNA
chr
+
1704511
1704768
chr
+
3350679
3350698
36
3.4
bamE
arcZ
CDS
sRNA
chr
+
2753630
2753714
chr
+
3350679
3350698
75
40.8
gpsA
arcZ
CDS
sRNA
chr
-
3782620
3782729
chr
+
3350662
3350698
133
11.1
yaeP
arcZ
CDS
sRNA
chr
-
214007
214098
chr
+
3350613
3350698
30
15.7
sfsA
arcZ
CDS
sRNA
chr
-
161324
161377
chr
+
3350678
3350697
26
13.5
tdcE
arcZ
CDS
sRNA
chr
-
3261984
3262055
chr
+
3350624
3350697
48
22.6
1
2
3
4
5
6
7
8
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52
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Escherichia coli K-12 MG1655
Enteropathogenic Escherichia coli
Klebsiella pneumoniae str. SGH10