RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
yejG.5UTR arcZ 5UTR sRNA chr - 2278217 2278278 chr + 3350662 3350698 67 11.1
ygiM arcZ CDS sRNA chr + 3201335 3201384 chr + 3350676 3350697 23 10.2
rsgA arcZ CDS sRNA chr - 4391496 4391546 chr + 3350608 3350697 36 5.3
tar arcZ CDS sRNA chr - 1972079 1972471 chr + 3350616 3350700 832 6.2
mlaF arcZ CDS sRNA chr - 3339282 3339374 chr + 3350662 3350698 22 11.5
secD arcZ CDS sRNA chr + 427991 428067 chr + 3350665 3350697 28 14.1
helD arcZ CDS sRNA chr + 1024734 1024799 chr + 3350678 3350697 11 16.4
yijD.AS arcZ AS sRNA chr - 4161919 4162075 chr + 3350678 3350697 13 40.2
oppA arcZ CDS sRNA chr + 1302400 1302463 chr + 3350675 3350697 29 16.9
pgi arcZ CDS sRNA chr + 4234781 4234967 chr + 3350663 3350697 40 49.1
polA arcZ CDS sRNA chr + 4047083 4047150 chr + 3350677 3350697 10 40.7
rfe arcZ CDS sRNA chr + 3967996 3968034 chr + 3350677 3350697 20 10.9
mtgA arcZ CDS sRNA chr - 3349548 3349550 chr + 3350680 3350697 14 15.5
lptB arcZ CDS sRNA chr + 3343981 3344048 chr + 3350666 3350698 47 7.1
blr arcZ CDS sRNA chr + 1704511 1704768 chr + 3350679 3350698 36 3.4
bamE arcZ CDS sRNA chr + 2753630 2753714 chr + 3350679 3350698 75 40.8
gpsA arcZ CDS sRNA chr - 3782620 3782729 chr + 3350662 3350698 133 11.1
yaeP arcZ CDS sRNA chr - 214007 214098 chr + 3350613 3350698 30 15.7
sfsA arcZ CDS sRNA chr - 161324 161377 chr + 3350678 3350697 26 13.5
tdcE arcZ CDS sRNA chr - 3261984 3262055 chr + 3350624 3350697 48 22.6