RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

dppA.5UTR

Summary:

Name ID Genomic annotation Chromosome Strand
dppA.5UTR EG10248.5UTR 5UTR chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 2627 1.00 0.00 4
Stat. Phase (Melamed et al. 2016) 3 8893 0.67 0.33 4
Iron Limitation (Melamed et al. 2016) 1 3503 1.00 0.00 4

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
gcvB sRNA Show interaction Show interaction Show interaction
hdeA.5UTR 5UTR Show interaction
rdlA cASt Show interaction