RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

dppA.5UTR - gcvB interactions in library 'Iron Limitation':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
gcvB dppA.5UTR sRNA 5UTR chr + 2942694 2942774 chr - 3707678 3707777 567 2.8
dppA.5UTR gcvB 5UTR sRNA chr - 3707380 3707870 chr + 2942717 2942902 2936 3.6

dppA.5UTR reads

gcvB reads