RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

gcvB - rppH interactions in library 'Iron Limitation':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
rppH gcvB CDS sRNA chr - 2968587 2968678 chr + 2942795 2942871 159 4.9
gcvB rppH sRNA CDS chr + 2942695 2942770 chr - 2968587 2968678 75 2.5

gcvB reads

rppH reads