RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

gcvB - glpF.5UTR interactions in library 'Iron Limitation':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
glpF.5UTR gcvB 5UTR sRNA chr - 4118088 4118162 chr + 2942718 2942770 65 2.9
gcvB glpF.5UTR sRNA 5UTR chr + 2942695 2942770 chr - 4118078 4118138 122 4.9

gcvB reads

glpF.5UTR reads