RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

gcvB - cysJ.5UTR interactions in library 'Stationary Phase':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
gcvB cysJ.5UTR sRNA 5UTR chr + 2942695 2942845 chr - 2891879 2891933 22 8.8
cysJ.5UTR gcvB 5UTR sRNA chr - 2891905 2891965 chr + 2942718 2942869 28 5.0

gcvB reads

cysJ.5UTR reads