RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

gcvB - dcyD.5UTR interactions in library 'Exponential Phase':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
gcvB dcyD.5UTR sRNA 5UTR chr + 2942695 2942772 chr - 1999394 1999567 215 2.6
dcyD.5UTR gcvB 5UTR sRNA chr - 1999499 1999664 chr + 2942716 2942776 103 1.9

gcvB reads

dcyD.5UTR reads