RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

thrL

Summary:

Name ID Genomic annotation Chromosome Strand
thrL EG11277 CDS chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 174 0.00 -1.00 2
Stat. Phase (Melamed et al. 2016) 1 952 1.00 0.00 9
Iron Limitation (Melamed et al. 2016) 1 1011 1.00 0.00 0

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
gcvB sRNA Show interaction Show interaction Show interaction