RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

gcvB - gltI.5UTR interactions in library 'Stationary Phase':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
gltI.5UTR gcvB 5UTR sRNA chr - 687779 687868 chr + 2942717 2942866 119 11.0
gcvB gltI.5UTR sRNA 5UTR chr + 2942695 2942770 chr - 687682 687842 178 18.0
gcvB gltI.5UTR sRNA 5UTR chr + 2942782 2942853 chr - 687783 687828 30 3.4

gcvB reads

gltI.5UTR reads