RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

gcvB - livJ.5UTR interactions in library 'Iron Limitation':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
livJ.5UTR gcvB 5UTR sRNA chr - 3599683 3599763 chr + 2942718 2942870 127 4.0
gcvB livJ.5UTR sRNA 5UTR chr + 2942695 2942777 chr - 3599680 3599825 101 11.5
gcvB livJ.5UTR sRNA 5UTR chr + 2942696 2942753 chr - 3599630 3599672 42 3.2

gcvB reads

livJ.5UTR reads