RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

gcvB - fliY.fliZ.IGT interactions in library 'Exponential Phase':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
gcvB fliY.fliZ.IGT sRNA IGT chr + 2942693 2942778 chr - 2000377 2000476 782 1.4
fliY.fliZ.IGT gcvB IGT sRNA chr - 2000185 2000675 chr + 2942676 2942878 4219 2.1

gcvB reads

fliY.fliZ.IGT reads