RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

fliY.fliZ.IGT

Flanking gene IDs:

  • G7039
  • EG11356

Summary:

Name ID Genomic annotation Chromosome Strand
fliY.fliZ.IGT G7039.EG11356.IGT IGT chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 5001 1.00 0.00 5
Stat. Phase (Melamed et al. 2016) 2 100 0.50 0.00 5
Iron Limitation (Melamed et al. 2016) 1 5009 1.00 0.00 5

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
gcvB sRNA Show interaction Show interaction Show interaction
micF sRNA Show interaction