RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

gcvB - raiA interactions in library 'Exponential Phase':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
raiA gcvB CDS sRNA chr + 2737180 2737278 chr + 2942716 2942777 455 1.6
raiA gcvB CDS sRNA chr + 2736782 2737276 chr + 2942780 2942878 1848 1.8
gcvB raiA sRNA CDS chr + 2942695 2942778 chr + 2737179 2737278 1318 2.4

gcvB reads

raiA reads