RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

gcvB - gltI.5UTR interactions in library 'Iron Limitation':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
gltI.5UTR gcvB 5UTR sRNA chr - 687780 687868 chr + 2942717 2942878 547 6.0
gltI.5UTR gcvB 5UTR sRNA chr - 687679 687776 chr + 2942719 2942873 61 2.4
gcvB gltI.5UTR sRNA 5UTR chr + 2942695 2942775 chr - 687687 687835 398 5.7

gcvB reads

gltI.5UTR reads