RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

gcvB - aroC.prmB.IGT interactions in library 'Exponential Phase':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
gcvB aroC.prmB.IGT sRNA IGT chr + 2942695 2942778 chr - 2447380 2447572 231 2.0
aroC.prmB.IGT gcvB IGT sRNA chr - 2447481 2447571 chr + 2942792 2942877 647 5.6
aroC.prmB.IGT gcvB IGT sRNA chr - 2447406 2447559 chr + 2942716 2942776 165 2.3

gcvB reads

aroC.prmB.IGT reads