RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

ubiX.argT.IGR

Flanking gene IDs:

  • EG11044
  • EG10072

Summary:

Name ID Genomic annotation Chromosome Strand
ubiX.argT.IGR EG11044.EG10072.IGR IGR chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 5814 0.00 -1.00 4
Stat. Phase (Melamed et al. 2016) 2 2602 0.00 -0.50 4
Iron Limitation (Melamed et al. 2016) 1 10152 0.00 -1.00 4

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
gcvB sRNA Show interaction Show interaction Show interaction
hisQ CDS Show interaction