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RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

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Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
glpK cpxP.3UTR CDS 3UTR chr - 4116278 4116374 chr + 4106357 4106387 69 30.5
ompF cpxP.3UTR CDS 3UTR chr - 986787 986874 chr + 4106333 4106387 183 5.4
glpT cpxP.3UTR CDS 3UTR chr - 2352281 2352345 chr + 4106330 4106387 43 4.4
gatB cpxP.3UTR CDS 3UTR chr - 2174292 2174363 chr + 4106349 4106388 58 8.6
napD cpxP.3UTR CDS 3UTR chr - 2302784 2302837 chr + 4106351 4106387 19 5.5
alaS cpxP.3UTR CDS 3UTR chr - 2819506 2819592 chr + 4106379 4106387 10 18.8
lpp cpxP.3UTR CDS 3UTR chr + 1757386 1757473 chr + 4106310 4106373 59 13.3
flgE cpxP.3UTR CDS 3UTR chr + 1133226 1133348 chr + 4106366 4106387 57 17.0
glpT cpxP.3UTR CDS 3UTR chr - 2351116 2351250 chr + 4106079 4106387 41 7.4
glpK cpxP.3UTR CDS 3UTR chr - 4116391 4116535 chr + 4106356 4106387 43 3.9
mcaS csgD.5UTR sRNA 5UTR chr - 1405709 1405752 chr - 1103146 1103274 19 6.2
ydfH.EST3UTR cspA.3UTR 3UTR 3UTR chr + 1629041 1629074 chr + 3720315 3720317 69 3543.9
btuB cspA.3UTR CDS 3UTR chr + 4163632 4163673 chr + 3720315 3720316 15 368.6
yibF cspA.3UTR CDS 3UTR chr - 3761802 3761978 chr + 3720316 3720317 11 169.5
sodB.5UTR cspE 5UTR CDS chr + 1735350 1735367 chr + 657299 657342 14 8.7
tyrU cspE tRNA CDS chr + 4175500 4175537 chr + 657309 657549 121 4.6
narK cusC.cusF.IGT_AS CDS AS chr + 1279231 1279482 chr - 596990 597044 23 5.5
yeiH cyaR CDS sRNA chr + 2249717 2249956 chr + 2167162 2167201 1026 98.5
polB.AS cyaR AS sRNA chr + 64189 64239 chr + 2167173 2167201 53 40.1
yidI cyaR CDS sRNA chr + 3856778 3856892 chr + 2167155 2167201 254 35.0