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RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

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Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
rtcA cyaR CDS sRNA chr - 3556098 3556136 chr + 2167149 2167200 10 25.5
miaA.hfq.IGT cyaR IGT sRNA chr + 4399887 4400377 chr + 2167136 2167201 5180 6.9
yfdK.yfdI.IGR cyaR IGR sRNA chr - 2470584 2470694 chr + 2167154 2167201 253 8.6
yecH cyaR CDS sRNA chr - 1989202 1989510 chr + 2167136 2167201 735 13.4
ascB cyaR CDS sRNA chr + 2841010 2841061 chr + 2167146 2167201 14 13.8
lysC cyaR CDS sRNA chr - 4232103 4232174 chr + 2167175 2167200 17 22.7
insA-2 cyaR CDS sRNA chr - 279805 279862 chr + 2167159 2167200 50 8.4
yfeH cyaR CDS sRNA chr + 2527483 2527574 chr + 2167156 2167201 21 17.1
ygdQ cyaR CDS sRNA chr + 2970509 2970612 chr + 2167155 2167201 93 3.5
dsdC cyaR CDS sRNA chr - 2476688 2476902 chr + 2167156 2167202 43 11.3
nhaA cyaR CDS sRNA chr + 18520 18599 chr + 2167153 2167201 48 8.1
cobC.rsfS.IGR cyaR IGR sRNA chr - 669103 669142 chr + 2167160 2167201 39 16.3
plaP cyaR CDS sRNA chr - 2086515 2086703 chr + 2167143 2167200 42 8.0
nikB cyaR CDS sRNA chr + 3616028 3616077 chr + 2167185 2167201 49 8.7
trkG cyaR CDS sRNA chr + 1423799 1424176 chr + 2167158 2167200 33 8.2
ynfK cyaR CDS sRNA chr - 1667181 1667269 chr + 2167139 2167201 223 4.4
dcuC cyaR CDS sRNA chr - 655588 656024 chr + 2167140 2167201 813 10.7
wbbH cyaR CDS sRNA chr - 2106493 2106562 chr + 2167158 2167200 43 16.3
mdtK cyaR CDS sRNA chr + 1743417 1743547 chr + 2167146 2167201 53 4.2
crcB.tatE.IGR cyaR IGR sRNA chr + 657998 658009 chr + 2167163 2167201 12 10.5