RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
yghZ cyaR CDS sRNA chr + 3147793 3147977 chr + 2167158 2167200 57 9.9
exuT cyaR CDS sRNA chr + 3246409 3246465 chr + 2167191 2167200 11 12.4
yehU cyaR CDS sRNA chr - 2214232 2214671 chr + 2167149 2167175 10 14.2
tolB cyaR CDS sRNA chr + 777793 777870 chr + 2167153 2167200 19 9.2
glf cyaR CDS sRNA chr - 2108196 2108376 chr + 2167146 2167200 106 5.0
ftsX cyaR CDS sRNA chr - 3601592 3601664 chr + 2167140 2167201 44 6.9
yqjA cyaR CDS sRNA chr + 3248290 3248378 chr + 2167153 2167200 39 6.8
cstA cyaR CDS sRNA chr + 631781 631974 chr + 2167158 2167200 78 12.5
ygaZ cyaR CDS sRNA chr + 2809910 2810058 chr + 2167144 2167200 61 2.4
slyB cyaR CDS sRNA chr + 1719977 1720174 chr + 2167149 2167201 189 12.3
fsaA.EST3UTR cyaR 3UTR sRNA chr + 864302 864360 chr + 2167191 2167200 20 18.7
pgpB cyaR CDS sRNA chr + 1339400 1339769 chr + 2167147 2167200 48 4.9
rimP.metY.IGT cyaR IGT sRNA chr - 3317984 3318068 chr + 2167148 2167201 180 8.2
gntP cyaR CDS sRNA chr - 4550799 4551273 chr + 2167159 2167200 28 3.8
glgB cyaR CDS sRNA chr - 3572682 3572776 chr + 2167146 2167200 25 9.3
ftsK cyaR CDS sRNA chr + 936878 937076 chr + 2167161 2167201 87 6.9
hflX cyaR CDS sRNA chr + 4400594 4400765 chr + 2167136 2167201 250 4.1
uspE cyaR CDS sRNA chr - 1397877 1397973 chr + 2167162 2167200 139 7.3
arcB cyaR CDS sRNA chr - 3351726 3351770 chr + 2167135 2167200 25 6.5
malK cyaR CDS sRNA chr + 4246735 4246874 chr + 2167154 2167201 169 11.3