RILseqDB
A database of Hfq-mediated RNA interactions determined by RIL-seq
RILseqDB
Interactions
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RNA
Interactions
Shared interactors
Data sets
Experiments
Libraries
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E. coli K-12
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Name
Genomic annotation
RNA1
RNA2
RNA1
RNA2
RNA1
RNA2
Chromosome
Strand
Start of first read
Start of last read
Chromosome
Strand
Start of last read
Start of first read
Interactions
Odds Ratio
yghZ
cyaR
CDS
sRNA
chr
+
3147793
3147977
chr
+
2167158
2167200
57
9.9
exuT
cyaR
CDS
sRNA
chr
+
3246409
3246465
chr
+
2167191
2167200
11
12.4
yehU
cyaR
CDS
sRNA
chr
-
2214232
2214671
chr
+
2167149
2167175
10
14.2
tolB
cyaR
CDS
sRNA
chr
+
777793
777870
chr
+
2167153
2167200
19
9.2
glf
cyaR
CDS
sRNA
chr
-
2108196
2108376
chr
+
2167146
2167200
106
5.0
ftsX
cyaR
CDS
sRNA
chr
-
3601592
3601664
chr
+
2167140
2167201
44
6.9
yqjA
cyaR
CDS
sRNA
chr
+
3248290
3248378
chr
+
2167153
2167200
39
6.8
cstA
cyaR
CDS
sRNA
chr
+
631781
631974
chr
+
2167158
2167200
78
12.5
ygaZ
cyaR
CDS
sRNA
chr
+
2809910
2810058
chr
+
2167144
2167200
61
2.4
slyB
cyaR
CDS
sRNA
chr
+
1719977
1720174
chr
+
2167149
2167201
189
12.3
fsaA.EST3UTR
cyaR
3UTR
sRNA
chr
+
864302
864360
chr
+
2167191
2167200
20
18.7
pgpB
cyaR
CDS
sRNA
chr
+
1339400
1339769
chr
+
2167147
2167200
48
4.9
rimP.metY.IGT
cyaR
IGT
sRNA
chr
-
3317984
3318068
chr
+
2167148
2167201
180
8.2
gntP
cyaR
CDS
sRNA
chr
-
4550799
4551273
chr
+
2167159
2167200
28
3.8
glgB
cyaR
CDS
sRNA
chr
-
3572682
3572776
chr
+
2167146
2167200
25
9.3
ftsK
cyaR
CDS
sRNA
chr
+
936878
937076
chr
+
2167161
2167201
87
6.9
hflX
cyaR
CDS
sRNA
chr
+
4400594
4400765
chr
+
2167136
2167201
250
4.1
uspE
cyaR
CDS
sRNA
chr
-
1397877
1397973
chr
+
2167162
2167200
139
7.3
arcB
cyaR
CDS
sRNA
chr
-
3351726
3351770
chr
+
2167135
2167200
25
6.5
malK
cyaR
CDS
sRNA
chr
+
4246735
4246874
chr
+
2167154
2167201
169
11.3
1
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10
11
12
13
14
15
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52
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Escherichia coli K-12 MG1655
Enteropathogenic Escherichia coli
Klebsiella pneumoniae str. SGH10