RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
ftsW cyaR CDS sRNA chr + 99016 99263 chr + 2167164 2167200 40 4.2
flgG cyaR CDS sRNA chr + 1135079 1135113 chr + 2167143 2167200 107 4.5
nuoL cyaR CDS sRNA chr - 2394679 2394761 chr + 2167156 2167201 42 6.5
ansB.5UTR cyaR 5UTR sRNA chr - 3100579 3100753 chr + 2167136 2167201 693 2.5
ftsZ cyaR CDS sRNA chr + 105512 105600 chr + 2167160 2167200 61 2.4
tsx cyaR CDS sRNA chr - 431087 431276 chr + 2167140 2167201 339 12.1
clpS cyaR CDS sRNA chr + 923183 923265 chr + 2167154 2167201 121 10.7
ccmC cyaR CDS sRNA chr - 2295613 2295998 chr + 2167147 2167200 58 2.5
ssb.5UTR cyaR 5UTR sRNA chr + 4274083 4274117 chr + 2167154 2167200 41 6.8
yacL cyaR CDS sRNA chr + 134436 134874 chr + 2167149 2167200 104 4.2
fabG cyaR CDS sRNA chr + 1151188 1151270 chr + 2167152 2167201 160 4.0
glpT cyaR CDS sRNA chr - 2351779 2352077 chr + 2167137 2167201 531 1.4
dcuA cyaR CDS sRNA chr - 4366685 4366749 chr + 2167177 2167201 45 3.2
zapB cyaR CDS sRNA chr + 4118479 4118574 chr + 2167148 2167200 120 3.4
recA cyaR CDS sRNA chr - 2822881 2822973 chr + 2167135 2167200 52 5.5
gpmM cyaR CDS sRNA chr + 3785278 3785360 chr + 2167149 2167200 69 4.4
waaF cyaR CDS sRNA chr + 3795428 3795633 chr + 2167150 2167200 26 5.8
gatB cyaR CDS sRNA chr - 2174302 2174366 chr + 2167148 2167176 30 5.1
frdD cyaR CDS sRNA chr - 4379079 4379254 chr + 2167146 2167200 114 2.2
bamC cyaR CDS sRNA chr - 2598501 2598667 chr + 2167167 2167201 37 4.2