RILseqDB
A database of Hfq-mediated RNA interactions determined by RIL-seq
RILseqDB
Interactions
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RNA
Interactions
Shared interactors
Data sets
Experiments
Libraries
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E. coli K-12
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Name
Genomic annotation
RNA1
RNA2
RNA1
RNA2
RNA1
RNA2
Chromosome
Strand
Start of first read
Start of last read
Chromosome
Strand
Start of last read
Start of first read
Interactions
Odds Ratio
ftsW
cyaR
CDS
sRNA
chr
+
99016
99263
chr
+
2167164
2167200
40
4.2
flgG
cyaR
CDS
sRNA
chr
+
1135079
1135113
chr
+
2167143
2167200
107
4.5
nuoL
cyaR
CDS
sRNA
chr
-
2394679
2394761
chr
+
2167156
2167201
42
6.5
ansB.5UTR
cyaR
5UTR
sRNA
chr
-
3100579
3100753
chr
+
2167136
2167201
693
2.5
ftsZ
cyaR
CDS
sRNA
chr
+
105512
105600
chr
+
2167160
2167200
61
2.4
tsx
cyaR
CDS
sRNA
chr
-
431087
431276
chr
+
2167140
2167201
339
12.1
clpS
cyaR
CDS
sRNA
chr
+
923183
923265
chr
+
2167154
2167201
121
10.7
ccmC
cyaR
CDS
sRNA
chr
-
2295613
2295998
chr
+
2167147
2167200
58
2.5
ssb.5UTR
cyaR
5UTR
sRNA
chr
+
4274083
4274117
chr
+
2167154
2167200
41
6.8
yacL
cyaR
CDS
sRNA
chr
+
134436
134874
chr
+
2167149
2167200
104
4.2
fabG
cyaR
CDS
sRNA
chr
+
1151188
1151270
chr
+
2167152
2167201
160
4.0
glpT
cyaR
CDS
sRNA
chr
-
2351779
2352077
chr
+
2167137
2167201
531
1.4
dcuA
cyaR
CDS
sRNA
chr
-
4366685
4366749
chr
+
2167177
2167201
45
3.2
zapB
cyaR
CDS
sRNA
chr
+
4118479
4118574
chr
+
2167148
2167200
120
3.4
recA
cyaR
CDS
sRNA
chr
-
2822881
2822973
chr
+
2167135
2167200
52
5.5
gpmM
cyaR
CDS
sRNA
chr
+
3785278
3785360
chr
+
2167149
2167200
69
4.4
waaF
cyaR
CDS
sRNA
chr
+
3795428
3795633
chr
+
2167150
2167200
26
5.8
gatB
cyaR
CDS
sRNA
chr
-
2174302
2174366
chr
+
2167148
2167176
30
5.1
frdD
cyaR
CDS
sRNA
chr
-
4379079
4379254
chr
+
2167146
2167200
114
2.2
bamC
cyaR
CDS
sRNA
chr
-
2598501
2598667
chr
+
2167167
2167201
37
4.2
1
...
12
13
14
15
16
17
...
52
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Escherichia coli K-12 MG1655
Enteropathogenic Escherichia coli
Klebsiella pneumoniae str. SGH10