RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

gatY - gcvB interactions in library 'Iron Limitation':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
gcvB gatY sRNA CDS chr + 2942695 2942860 chr - 2177082 2177211 1114 5.0
gatY gcvB CDS sRNA chr - 2177179 2177234 chr + 2942716 2942777 272 7.5
gatY gcvB CDS sRNA chr - 2177183 2177236 chr + 2942793 2942876 193 2.4

gatY reads

gcvB reads