RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

cstA.5UTR - gcvB interactions in library 'Iron Limitation':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
gcvB cstA.5UTR sRNA 5UTR chr + 2942782 2942864 chr + 629880 629966 139 3.0
cstA.5UTR gcvB 5UTR sRNA chr + 629805 629873 chr + 2942880 2942901 127 3.3

cstA.5UTR reads

gcvB reads