RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

cstA.5UTR - gcvB interactions in library 'Stationary Phase':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
gcvB cstA.5UTR sRNA 5UTR chr + 2942696 2942871 chr + 629876 629974 575 9.8
cstA.5UTR gcvB 5UTR sRNA chr + 629848 629877 chr + 2942796 2942902 584 9.9

cstA.5UTR reads

gcvB reads