RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

hcaR.5UTR

Summary:

Name ID Genomic annotation Chromosome Strand
hcaR.5UTR G7331.5UTR 5UTR chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 14 0.00 -1.00 6
Stat. Phase (Melamed et al. 2016) 1 13 0.00 -1.00 6
Iron Limitation (Melamed et al. 2016) 1 18 0.00 -1.00 6

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
hcaT CDS Show interaction Show interaction Show interaction