RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

rpoE.5UTR

Summary:

Name ID Genomic annotation Chromosome Strand
rpoE.5UTR EG11897.5UTR 5UTR chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 52 0.00 -1.00 3
Stat. Phase (Melamed et al. 2016) 3 225 0.00 -0.33 5
Iron Limitation (Melamed et al. 2016) 1 39 0.00 -1.00 3

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
arrS cASt Show interaction
micL sRNA Show interaction Show interaction Show interaction
ymfL.AS AS Show interaction