RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

nhaR.insAB-1.IGR

Flanking gene IDs:

  • EG11078
  • G0-10535

Summary:

Name ID Genomic annotation Chromosome Strand
nhaR.insAB-1.IGR EG11078.G0-10535.IGR IGR chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 21 1.00 0.00 4
Stat. Phase (Melamed et al. 2016) 1 23 1.00 0.00 4
Iron Limitation (Melamed et al. 2016) 2 40 0.50 0.00 4

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
crl CDS Show interaction Show interaction Show interaction
frsA CDS Show interaction