RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

clpB.rrsG.IGR

Flanking gene IDs:

  • EG10157
  • EG30089

Summary:

Name ID Genomic annotation Chromosome Strand
clpB.rrsG.IGR EG10157.EG30089.IGR IGR chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 15 0.00 -1.00 3
Stat. Phase (Melamed et al. 2016) 1 80 0.00 -1.00 3
Iron Limitation (Melamed et al. 2016) 1 26 0.00 -1.00 3

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
aceK CDS Show interaction Show interaction
leuZ.yecA.IGR IGR Show interaction