RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

csgD.5UTR - mcaS interactions in library 'Iron Limitation':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
mcaS csgD.5UTR sRNA 5UTR chr - 1405705 1405753 chr - 1103221 1103300 88 8.1
csgD.5UTR mcaS 5UTR sRNA chr - 1103228 1103276 chr - 1405657 1405705 142 196.4
csgD.5UTR mcaS 5UTR sRNA chr - 1103279 1103323 chr - 1405678 1405720 44 22.3
csgD.5UTR mcaS 5UTR sRNA chr - 1103278 1103329 chr - 1405657 1405676 37 3.8

csgD.5UTR reads

mcaS reads