RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

csgD.5UTR - mcaS interactions in library 'Exponential Phase':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
mcaS csgD.5UTR sRNA 5UTR chr - 1405709 1405752 chr - 1103146 1103274 19 6.2
csgD.5UTR mcaS 5UTR sRNA chr - 1103240 1103276 chr - 1405657 1405698 23 92.5
csgD.5UTR mcaS 5UTR sRNA chr - 1103283 1103325 chr - 1405658 1405713 24 7.0

csgD.5UTR reads

mcaS reads