RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

insH-1 - oppA interactions in library 'Iron Limitation':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
insH-1 oppA CDS CDS chr - 274135 274369 chr + 1301482 1301533 13 42.4
insH-1 oppA CDS CDS chr - 273989 274373 chr + 1300977 1301442 48 6.3
insH-1 oppA CDS CDS chr - 274478 274862 chr + 1301180 1301652 25 4.2

insH-1 reads

oppA reads