RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

sgrS - ptsG.5UTR interactions in library 'Stationary Phase':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
sgrS ptsG.5UTR sRNA 5UTR chr + 77366 77550 chr + 1157820 1157998 12 171.1
ptsG.5UTR sgrS 5UTR sRNA chr + 1157754 1157840 chr + 77394 77594 47 694.4

sgrS reads

ptsG.5UTR reads