RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

amiA - uhpT.EST3UTR interactions in library 'Iron Limitation':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
amiA uhpT.EST3UTR CDS 3UTR chr + 2552241 2552666 chr - 3845731 3845771 41 3.8
amiA uhpT.EST3UTR CDS 3UTR chr + 2552835 2553227 chr - 3845732 3845762 16 12.9

amiA reads

uhpT.EST3UTR reads