RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

fliC - nlpE.EST3UTR interactions in library 'Iron Limitation':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
nlpE.EST3UTR fliC 3UTR CDS chr + 216049 216055 chr - 2003080 2003527 48 10.8
fliC nlpE.EST3UTR CDS 3UTR chr - 2003197 2003566 chr + 216074 216079 43 12.5

fliC reads

nlpE.EST3UTR reads