RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

manX - sgrS interactions in library 'Iron Limitation':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
sgrS manX sRNA CDS chr + 77365 77548 chr + 1902008 1902396 30 49.8
manX sgrS CDS sRNA chr + 1901935 1902307 chr + 77391 77594 391 543.7
manX sgrS CDS sRNA chr + 1902383 1902471 chr + 77405 77593 10 78.3

manX reads

sgrS reads