RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

hupB.5UTR - gpsA interactions in library 'Iron Limitation':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
hupB.5UTR gpsA 5UTR CDS chr + 461332 461467 chr - 3782582 3782651 42 4.6
gpsA hupB.5UTR CDS 5UTR chr - 3782678 3782713 chr + 461360 461474 57 15.0

hupB.5UTR reads

gpsA reads