RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

hns - hupB.5UTR interactions in library 'Iron Limitation':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
hupB.5UTR hns 5UTR CDS chr + 461324 461461 chr - 1292794 1292933 176 3.4
hns hupB.5UTR CDS 5UTR chr - 1292887 1292960 chr + 461362 461475 98 7.3

hns reads

hupB.5UTR reads