Welcome
RILseqDB is a database of Hfq-mediated RNA interactions in bacteria that were determined by RIL-seq (RNA Interaction by Ligation and Sequencing), an experimental-computational methodology for in vivo capturing of Hfq-mediated RNA interactions (Melamed et al., Mol. Cell, 2016).
The database provides a user friendly interface to query and view the results of RIL-seq experiments. Currently it holds information for interactions revealed in Escherichia coli K-12 MG1655, Enteropathogenic Escherichia coli (EPEC) and Klebsiella pneumoniae str. SGH10.
Database Features
- RNA pages, containing a general summary, condition breakdown and full interactome
- Reviewing specific interactions read coverage
- Searching for interactions by RNA types and names
- Searching for common interacting partner/s of a set of RNAs
If you use RILseqDB in your research, please cite:
Melamed S, Peer A, Faigenbaum-Romm R, Gatt YE, Reiss N, Bar A, Altuvia Y, Argaman L and Margalit H (2016). Global Mapping of Small RNA-Target Interactions in Bacteria. Mol Cell 63: 884-897